PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G032300.1
Common NameB456_013G032300, LOC105782458
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 213aa    MW: 23245 Da    PI: 5.5617
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G032300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.9e-08333434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++C+ +++  +++fC  ++  lC++C ++ H
  Gorai.013G032300.1  3 TICDVCDSAAAIIFCAADEAALCRSCDEKVH 33
                        68**************************998 PP

2zf-B_box28.92.4e-095291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Gorai.013G032300.1 52 NVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                        789***************************9995544455 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.082147IPR000315B-box-type zinc finger
SMARTSM003364.7E-8147IPR000315B-box-type zinc finger
CDDcd000219.40E-6345No hitNo description
PfamPF006435.3E-6341IPR000315B-box-type zinc finger
SMARTSM003365.8E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155196IPR000315B-box-type zinc finger
PfamPF006432.2E-75285IPR000315B-box-type zinc finger
CDDcd000213.47E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTICDVCDS AAAIIFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SNVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR LEEPGLQPLS  120
PNEVRKDLNQ QSKLAVRENR QNHGVSHIPL HDDNAKGDGE VGNELIDLNA RPQQVQGQAS  180
INQEQAMDVS SGNNHDTTSG IPDGSFKQEP EK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462661.11e-157PREDICTED: B-box zinc finger protein 19-like
RefseqXP_012462662.11e-157PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM52e-83BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2V8821e-157A0A0D2V882_G
STRINGPOPTR_0009s12730.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-71DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]